Binding of Biomolecules at Inorganic Phosphate Surfaces

SNIC 2018/3-601


SNIC Medium Compute

Principal Investigator:

Mattias Edén


Stockholms universitet

Start Date:


End Date:


Primary Classification:

10402: Physical Chemistry

Secondary Classification:

10403: Materials Chemistry



By combining results from atomistic MD simulations, DFT calculations, and NMR experiments, we will study the adsorption of phosphoserine molecules at the surface of calcium hydroxyapatite (HA), which is the mother structure of bone mineral. In this continuation project, we will also extend the studies to encompass citrate and various amino acids. Phosphoserine (Pser) is an ester of serine and phosphoric acid, and is abundant in many proteins believed to initiate and regulate bone growth [1]. Our studies intimately connect two research areas—biomaterials and biomineralization: 1. Pser-bearing calcium phosphate cements (CPCs) for the next-generation bone implants: After a mixture of calcium phosphates is injected in a bone/tooth void, it hardens to a HA-like cement, which strongly interfaces with the surrounding bone tissue. Including Pser in the cement improves its mechanical properties and also stimulates further bone growth around the implant. However, the reasons behind these favorable properties are largely unknown. As one part of the SSF-funded project “Active Calcium Phosphate Cements”, we aim at a better understanding of the Pser/CPC interface by its selective experimental probing and by MD/DFT modeling. 2. Biomineralization: A long-standing and highly debated question without a clear consensus concerns the mechanism behind bone formation and if/how this process is initiated and controlled by non-collagenous proteins (NCPs). NCPs involved in bone mineralization in vertebrates share the feature of a high abundance of acidic and phosphorylated residues [1], thereby giving the proteins a high affinity for binding at inorganic phosphate surfaces, such as bone mineral, HA, and CPCs. The modeling will mainly involve atomistic MD simulations incorporating meta-dynamics of a system with HA, water, and the organic components, where we will explicitly account for the dependence of the HA surface speciation on the pH of the solution [2]; this is rarely considered in literature reports on similar calculations on related systems. The computations will explore the relative affinities/binding energies of the organic molecules at different crystallographic surfaces, locate their preferred orientation at the surface, and include the dependence of these parameters/properties on the pH and concentration. The MD simulations will be benchmarked against Car-Parrinello DFT calculations. The modeled results will be compared with data from advanced solid-state NMR experiments on CPC-Pser composites and model systems of nano-crystalline HA grown from solutions comprising each organic species. References: [1] A George, A Veis, Chem. Rev. 108, p4670 (2008) [2] T-J Lin, H Heinz, J. Phys. Chem C, 120, p4975 (2016)