SNIC SUPR
Nanopore
Dnr:

sens2019551

Type:

SNIC SENS

Principal Investigator:

Lars Feuk

Affiliation:

Uppsala universitet

Start Date:

2019-07-05

End Date:

2020-08-01

Primary Classification:

30107: Medical Genetics

Allocation

Abstract

We will start running human samples on Oxford Nanopore PromethION to identify structural variation. Data will be mapped with Minimap2 and Sniffles will be used for variant calling. We will primarily work with base called data, but may in some cases want to keep raw data (large storage requirements).