SNIC SUPR
DogCatGenomics
Dnr:

SNIC 2020/5-57

Type:

SNIC Medium Compute

Principal Investigator:

Tomas Bergstrom

Affiliation:

Sveriges lantbruksuniversitet

Start Date:

2020-02-01

End Date:

2021-02-01

Primary Classification:

40402: Genetics and Breeding in Agricultural Sciences

Allocation

Abstract

Dear Uppmax, We are still in the process of sequencing dogs and would like to extend the project for at least one year. We are currently doing both Long-read sequencing with Oxford Nanopore and Illumina sequencing, as well as RNA-seq. The aim of the project is to analyse the genetic diversity of Nordic dog breeds and therefore the old and the new data is analysed simultaneously. We do try to remove all unnecessary data from the project folder but as we have so much new data on the way, we would appreciate if we could keep the 50 TB allocation for another 12 months. One paper has so far been published. ( https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007873 ). All the best regards, Tomas