Hiplex genotyping P.abies

Dnr:

SNIC 2016/7-53

Type:

SNAC Small

Principal Investigator:

Malin Elfstrand

Affiliation:

Sveriges lantbruksuniversitet

Start Date:

2016-05-03

End Date:

2018-06-01

Primary Classification:

40402: Genetik och förädling

Webpage:

Allocation

Abstract

The proposed project aim to evaluate a strategy for genotyping in woody species it is based on multiplex PCR and indexing of samples. Indexed samples will be pooled and amplicon sequenced on the illumina Miseq (2*150bp). We intend to call SNPs and estimate standard population genetic parameters and to prefor GWAS to identify resistance loci.