SNIC SUPR
Captured metagenomics
Dnr:

SNIC 2016/14-10

Type:

Swestore Medium

Principal Investigator:

Dag Ahren

Affiliation:

Lunds universitet

Start Date:

2016-10-25

End Date:

2020-11-01

Primary Classification:

10609: Genetics (medical to be 30107 and agricultural to be 40402)

Secondary Classification:

10615: Evolutionary Biology

Webpage:

Allocation

Abstract

We are performing analyses on multiple targeted metagenomes from agricultural soils (10 soils). We have developed a bioinformatics pipeline to design probes that specifically target carbohydrate active enzymes, lignolytic enzymes as well as secreted proteases covering the entire tree of life. The analyses have been performed at Uppmax and I would like to store the data medium term at Swestore.