NeoAntigen Proteogenomics Discovery Pipeline Development

Dnr:

SNIC 2017/7-37

Type:

SNAC Small

Principal Investigator:

Alejandro Woodbridge

Affiliation:

Karolinska Institutet

Start Date:

2017-02-23

End Date:

2018-03-01

Primary Classification:

30108: Cell- och molekylärbiologi

Webpage:

http://www.lehtiolab.se

Allocation

Abstract

The sensitivity of MassSpec datasets rely heavily on the construction of a target peptide database. We are currently developing a pipeline which uses RNASeq data to optimize the target database. The Uppmax cluster will assist in generating the optimization testing of multiple parameters required to assess the optimal parameters.