SNIC
SUPR
SNIC SUPR
non-model FACS-seq
Dnr:

SNIC 2017/7-417

Type:

SNAC Small

Principal Investigator:

Cedric Patthey

Affiliation:

UmeƄ universitet

Start Date:

2017-12-28

End Date:

2019-04-01

Primary Classification:

10614: Developmental Biology

Webpage:

Allocation

Abstract

The aim of this project is to develop a method for transcriptome profiling of FACS-sorted cell populations in non-model species. The project will involve analysis of RNAseq data, including de novo transcriptome assembly, read mapping, read count, differential expression analysis, splice variants analysis. The species studied are chicken (genome available), European Amphioxus (no genome available) and Brook lamprey (no genome available)