SNIC
SUPR
SNIC SUPR
RNA sequencing C.intermedia
Dnr:

SNIC 2017/7-443

Type:

SNAC Small

Principal Investigator:

Cecilia Geijer

Affiliation:

Chalmers tekniska högskola

Start Date:

2018-01-09

End Date:

2019-04-01

Primary Classification:

20904: Bioenergy

Allocation

Abstract

We have previously sequenced and de novo assembled the genome of the yeast C. intermedia using PacBio at NGI Uppsala with good data obtained and the full genome covered. In this project, we would like to do some RNA sequencing of this yeast (clone) grown in medium supplemented with different carbon sources (in part to improve the annotation of the genome, in part to learn which genes are differently expressed in the different conditions. We also plan to do RNA seq for two different industrial strains of S. cerevisiae (for which we do not have the genomes sequenced) in one growth condition.