SNIC
SUPR
SNIC SUPR
Data move from Milou b2017117
Dnr:

SNIC 2018/8-7

Type:

SNAC Small

Principal Investigator:

Maria Kahlert

Affiliation:

Sveriges lantbruksuniversitet

Start Date:

2018-01-12

End Date:

2019-02-01

Primary Classification:

10610: Bioinformatics and Systems Biology (methods development to be 10203)

Webpage:

Allocation

Abstract

First trial of PacBio technique for Swedish freshwater benthic diatoms for metabarcoding, and comparison with results from PGM sequencing done at INRA, France. 40 samples of diatom DNA from metabarcoding, already prepared with tags and primers, equimolar pooled will be sent from INRA, France, to NGI, for finishing of the libraries and subsequent sequencing with PacBio. Sequencing results will be sent to UPPNEX and further to INRA, France where bioinformatics are available, for analysis. Agnes Bouchez Project leader at INRA, France.