SNIC
SUPR
SNIC SUPR
Bioinformatic Pipelines comparison
Dnr:

SNIC 2018/8-145

Type:

SNAC Small

Principal Investigator:

Bonnie Bailet

Affiliation:

Sveriges lantbruksuniversitet

Start Date:

2018-04-15

End Date:

2019-05-01

Primary Classification:

10610: Bioinformatics and Systems Biology (methods development to be 10203)

Allocation

Abstract

The aim is to compare the taxonomical assignation and OTUs clustering generated by different Bioinformatics pipelines (Mothur and Obitools). The pipelines will be used to run 60 DNA metabarcoding samples from Sweden, produced with PGM sequencer (INRA BioGeCo, FR) on 2 DNA markers RbcL and 18S-V4. This project was created by the DNAqua-net diatoms group.