SNIC
SUPR
SNIC SUPR
Current SNIC SENS Projects

Research Areas

The area is based on the three-digit level from classification.vr.se applied to the primary classification.

Computer and Information Sciences (14)

Allele-specific gene expression analysis

Olof Emanuelsson, Kungliga Tekniska högskolan
2018-01-10 – 2019-02-01

Deep genetic network compression

Mika Gustafsson, Linköpings universitet
2018-02-22 – 2019-03-01

Epigenetic regualation of adipose phenotypes

Indranil Sinha, Karolinska Institutet
2017-12-01 – 2018-06-01

Haplotype association studying on cancer-patients genotyping data

Jessada Thutkawkorapin, Karolinska Institutet
2017-11-29 – 2018-12-01

Interactions in genome-wide association studies of cardiovascular disease

Bengt Sennblad, Uppsala universitet
2018-01-18 – 2019-02-01

Internal UPPMAX test

Lennart Karlsson, Uppsala universitet
2017-01-24 – 2018-08-01

Intro to Bianca Workshop

Marcus Holm, Uppsala universitet
2018-05-23 – 2018-07-01

Processing of whole exome- and whole genome data from human germline DNA

Jessada Thutkawkorapin, Karolinska Institutet
2017-11-24 – 2018-12-01

RNAseq analyses in breast cancer proteotranscriptomics

Emma Niméus, Lunds universitet
2018-04-25 – 2019-05-01

SENS local UPPMAX project

Douglas Scofield, Uppsala universitet
2018-01-09 – 2019-05-01

STRT preprocessing and QC for sensitive data

Shintaro Katayama, Karolinska Institutet
2017-12-12 – 2019-01-01

Single-Cell Cell Lineage Trees

Jens Lagergren, Kungliga Tekniska högskolan
2018-02-28 – 2019-03-01

UPPMAX Testing

Erik Starbäck, Uppsala universitet
2017-03-06 – 2018-10-01

Whole genome sequencing of thyroid cancer samples

Jessada Thutkawkorapin, Karolinska Institutet
2018-01-18 – 2019-02-01

Biological Sciences (15)

Allergy studies in UK Biobank

Weronica Ek, Uppsala universitet
2017-12-01 – 2018-06-01

Epigenetic factors and chromatin modulators

Indranil Sinha, Karolinska Institutet
2018-01-15 – 2018-08-01

Exploring the impact of ultra-rare variants across diseases and traits

Andrea Ganna, Karolinska Institutet
2017-12-08 – 2019-01-01

Functional role of noncoding RNA in cancer

Chandrasekhar Kanduri, Göteborgs universitet
2017-11-27 – 2018-12-01

Gene Expression Analysis in Heart Failure

Bengt Persson, Uppsala universitet
2017-08-03 – 2018-09-01

Human Protein Atlas

Mathias Uhlen, Kungliga Tekniska högskolan
2017-11-27 – 2018-12-01

Human WGS on 10X Genomics

Adam Ameur, Uppsala universitet
2017-12-11 – 2018-08-01

Modeling survival expectancy of glioblastoma patients

Jan Komorowski, Uppsala universitet
2018-01-25 – 2019-07-01

NGI Genomics Application Development

Monica Nistér, Kungliga Tekniska högskolan
2016-11-01 – 2019-06-01

Post implantation development

Sarita Panula, Karolinska Institutet
2018-05-28 – 2019-06-01

Single-cell RNA sequencing of human adipocytes

Kirsty Spalding, Karolinska Institutet
2017-12-15 – 2019-01-01

Study of 600 WGS tumor-normal pairs data

Jessada Thutkawkorapin, Karolinska Institutet
2018-05-22 – 2019-06-01

VNTR X:43514348 in SweGen

Göran Arnqvist, Uppsala universitet
2017-12-12 – 2019-01-01

WGS development

Björn Nystedt, Uppsala universitet
2018-04-05 – 2019-05-01

WGS of GBM tumor-normal samples

Karin Forsberg Nilsson, Uppsala universitet
2017-06-02 – 2018-06-01

Basic Medicine (82)

10X genomics PMBL

Larry Mansouri, Uppsala universitet
2018-04-05 – 2019-05-01

10X scRNA on AD neurons

Joakim Klar, Uppsala universitet
2018-04-27 – 2018-11-01

3D Chromatin crosstalk: platform for epistasis among metabolic trait- and disease-associated genetic variants

Anita Göndör, Karolinska Institutet
2018-01-10 – 2019-02-01

3T_three_or_more_different_tumors

Daniel Nilsson, Karolinska Institutet
2018-01-25 – 2019-02-01

ANCA-vasculitis genetics

Johanna Dahlqvist, Uppsala universitet
2017-12-01 – 2018-12-01

Analysis of RNA sequencing data from patients suffering from coronary artery disease

Oscar Franzén, Karolinska Institutet
2017-05-15 – 2018-06-01

Application of genetic vectors for expression analysis in biomedical studies

Leonid Padyukov, Karolinska Institutet
2018-01-25 – 2019-02-01

BreastCancer_TargetedSeq

Kerstin Lindblad-Toh, Uppsala universitet
2018-01-18 – 2019-02-01

Brodinlab VirScan analysis

Petter Brodin, Karolinska Institutet
2018-01-25 – 2019-07-01

CMV-DANSeq-Surselect

Mohsen Karimi Arzenani, Karolinska Institutet
2018-01-25 – 2019-07-01

CMV-Sequencing-Pacbio

Mohsen Karimi Arzenani, Karolinska Institutet
2017-12-14 – 2018-07-01

Cancer gene genotypes in the Swedish population

Emma Tham, Karolinska Institutet
2017-10-19 – 2018-11-01

Characterization of mesenchymal stem cells

Hong Qian, Karolinska Institutet
2018-07-03 – 2019-08-01

ClinicalStructVar2017b

Anna Lindstrand, Karolinska Institutet
2017-06-09 – 2018-07-01

ClinicalStructVar2017c

Anna Lindstrand, Karolinska Institutet
2017-11-27 – 2018-12-01

DISSECT_SIAD_comparison

Lars Rönnblom, Uppsala universitet
2017-05-15 – 2018-06-01

DISSECT_SIAD_main

Lars Rönnblom, Uppsala universitet
2017-12-15 – 2019-02-01

EPIC-array analysis of human islets

Charlotte Ling, Lunds universitet
2017-08-29 – 2018-09-01

Epigenetics of Multiple Sclerosis

Maja Jagodic, Karolinska Institutet
2018-01-25 – 2019-08-01

FTO sequence in obese and lean

Helgi Schiöth, Uppsala universitet
2018-01-18 – 2019-02-01

Familial and syndromic childhood cancer

Fulya Taylan, Karolinska Institutet
2017-12-15 – 2019-01-01

Finding causal variants within schizophrenia risk loci

Patrick Sullivan, Karolinska Institutet
2016-12-15 – 2019-03-01

Functional characterization of non-coding mutations in CLL

Robert Mansson, Karolinska Institutet
2018-01-18 – 2019-02-01

Fusion transcripts in neuroblastoma

Johan Holmberg, Karolinska Institutet
2018-02-16 – 2019-03-01

Genetic architecture of sarcoidosis

Johan Grunewald, Karolinska Institutet
2018-01-18 – 2019-02-01

Genetic association studies in Addison's disease

Daniel Eriksson, Karolinska Institutet
2017-10-26 – 2018-11-01

Genetic causes of early-onset osteoporosis

Outimaija Mäkitie, Karolinska Institutet
2017-11-21 – 2019-01-01

Genetic studies in UK biobank

Åsa Johansson, Uppsala universitet
2017-11-29 – 2018-12-01

Genomic aggregation project of Sweden - GAPS

Patrick Sullivan, Karolinska Institutet
2018-01-10 – 2019-02-01

Genomic data from the Swedish Schizophrenia Study

Patrick Sullivan, Karolinska Institutet
2018-01-04 – 2019-02-01

Genomics of gene regulation in human tissue

Claes Wadelius, Uppsala universitet
2017-12-01 – 2018-12-01

Haloplex cancer sequencing

Ann-Christine Syvänen, Uppsala universitet
2018-01-05 – 2019-02-01

Helgenomsekvensering av samtliga Neisseria gonorrhoeae stammar isolerade i Sverige under 2016 - den första heltäckande nationella studien inkluderande mikrobiologiska, epidemiologiska och kliniska data

Magnus Unemo, Örebro universitet
2017-12-11 – 2019-01-01

Hemostatic regulation

Christina Jern, Göteborgs universitet
2018-01-18 – 2019-02-01

Histio

Jan-Inge Henter, Karolinska Institutet
2017-12-01 – 2018-12-01

Host-bacterial interaction in the gut

Kaisa Thorell, Karolinska Institutet
2018-02-16 – 2019-03-01

Human Addison Resequencing

Gerli Rosengren Pielberg, Uppsala universitet
2018-01-18 – 2019-02-01

ImmuneDiversity

Gunilla Karlsson Hedestam, Karolinska Institutet
2018-02-22 – 2019-03-01

Immunoglobulin genetics and transcriptomics in Rheumatoid Arthritis

Uta Hardt, Karolinska Institutet
2018-03-20 – 2019-04-01

Imputation methods in cohort with related individuals

Åsa Johansson, Uppsala universitet
2018-01-05 – 2019-02-01

Interaction between diet, food preference and lifestyle with genetic factors influencing body mass, body adiposity and obesity

Mathias Rask-Andersen, Uppsala universitet
2017-12-06 – 2018-08-01

Is men's cancer susceptibility linked to oxidative stress

Imran Ali, Karolinska Institutet
2018-01-18 – 2019-02-01

Malformation genetics

Hans Matsson, Karolinska Institutet
2018-04-09 – 2019-05-01

Molecular characterization of the 8p11-p12 chromosomal alteration involved in an aggressive form of breast cancer

Toshima Parris, Göteborgs universitet
2018-01-23 – 2018-08-01

NDD genetics

Kristiina Tammimies, Karolinska Institutet
2018-01-18 – 2019-02-01

NGS in SLE

Ann-Christine Syvänen, Uppsala universitet
2017-12-12 – 2019-02-01

NGS_in_complex_diseases_2017

Elisabet Einarsdottir, Karolinska Institutet
2017-11-17 – 2019-02-01

NMD genomics

Daniel Nilsson, Karolinska Institutet
2017-12-15 – 2018-08-01

Neural stem cell

Anna Falk, Karolinska Institutet
2018-01-25 – 2019-07-01

Neutropenia

Daniel Nilsson, Karolinska Institutet
2018-01-25 – 2019-02-01

Omics Oligodendrocyte human

Gonçalo Castelo-Branco, Karolinska Institutet
2018-04-05 – 2019-05-01

PAM 2018

Mona Ståhle, Karolinska Institutet
2018-05-03 – 2019-06-01

Patterns of epistasis in UK biobank

Simon Forsberg, Uppsala universitet
2018-01-25 – 2019-07-01

RNA binding proteins and noncoding RNA during virus infection

Wael Kamel, Uppsala universitet
2018-01-25 – 2019-08-01

RNA sequencing of cultured neurons, neuronal tissue and iPSCs

Anna Kähler, Karolinska Institutet
2018-01-19 – 2019-02-01

RNAseq in CLL

Richard Rosenquist Brandell, Uppsala universitet
2018-01-05 – 2018-08-01

RefPOPAC1

Erik Johansson, Umeå universitet
2017-11-14 – 2019-01-01

Rett

Lars Feuk, Uppsala universitet
2018-11-01 – 2019-11-01

Role of mRNA splicing in normal and malignant hematopoiesis

Petter Woll, Karolinska Institutet
2018-01-25 – 2018-08-01

SCZ WGS and RNAseq

Lars Feuk, Uppsala universitet
2017-10-26 – 2018-11-01

SNIC 2017/21-Forsberg

Lars Forsberg, Uppsala universitet
2018-01-23 – 2019-02-01

STR genetics

Patrik Magnusson, Karolinska Institutet
2018-01-15 – 2019-02-01

SciLifeLab National Project: Clonal evolution from diagnosis to relapse in childhood ALL cells

Ann-Christine Syvänen, Uppsala universitet
2016-11-10 – 2019-03-01

Sequencing of human ovarian tissue cells

Fredrik Lanner, Karolinska Institutet
2018-05-23 – 2019-06-01

Skin microbiome

Björn Andersson, Karolinska Institutet
2018-01-25 – 2019-02-01

Somatic mutations in aging and Alzheimer disease

Maria Eriksson, Karolinska Institutet
2017-12-01 – 2018-12-01

Super-enhancer mediated gene gating at the nuclear pore: novel principles of gene regulation in cancer

Rolf Ohlsson, Karolinska Institutet
2018-01-10 – 2019-02-01

Swedish WGS reference cohort database

Adam Ameur, Uppsala universitet
2016-07-21 – 2019-03-01

The Pharmacogenetic landscape in Nordic Populations

Volker Lauschke, Karolinska Institutet
2018-03-01 – 2019-03-01

The VIKING Study: The Västerbotten Imputation databanK of Near-complete Genomes - a stratified medicines initiative for genetically complex diseases

Paul Franks, Lunds universitet
2017-12-08 – 2019-01-01

The genetics of Ankylosing Spondylitis in a Swedish Cohort

Jennifer Meadows, Uppsala universitet
2018-01-05 – 2019-02-01

Tourette

Lars Feuk, Uppsala universitet
2017-10-26 – 2018-11-01

UrothelialCancer

Per Uhlén, Karolinska Institutet
2018-05-24 – 2019-06-01

Virome

Björn Andersson, Karolinska Institutet
2018-01-25 – 2019-02-01

WGS in stereotyped CLL subsets

Richard Rosenquist Brandell, Uppsala universitet
2018-01-05 – 2019-02-01

WGS of EA

Joakim Klar, Uppsala universitet
2018-01-18 – 2018-09-01

WGS of Trio families in ID and epilepsia

Ann-Charlotte Thuresson, Uppsala universitet
2018-01-18 – 2019-02-01

WGS_Analysis_SibPair

Johanna Andersson-Assarsson, Göteborgs universitet
2018-04-05 – 2019-05-01

Whole-genome bisulfite seq of human islets - a pilot study

Charlotte Ling, Lunds universitet
2017-08-29 – 2018-09-01

Whole-genome sequencing in a well characterized high kinship cohort to identify the rare variant landscape of complex traits

Åsa Johansson, Uppsala universitet
2016-11-23 – 2019-03-01

cyto_nuc transcriptomes

Lars Feuk, Uppsala universitet
2018-01-18 – 2019-02-01

scRNA seq ILC IBD

Jenny Mjösberg, Karolinska Institutet
2017-12-15 – 2019-01-01

Clinical Medicine (52)

AML ChIP-seq all samples

Karl Ekwall, Karolinska Institutet
2017-11-27 – 2018-12-01

Analysis of genetic abnormalities involved in the development of ovarian tumors

Toshima Parris, Göteborgs universitet
2018-01-18 – 2019-02-01

Analysis of human host and vaginal microbiome

Ulf Gyllensten, Uppsala universitet
2017-11-14 – 2018-12-01

Brain tumors

Malgorzata Lysiak, Linköpings universitet
2017-11-29 – 2018-12-01

BrainTumors

Beatrice Melin, Umeå universitet
2018-05-17 – 2019-06-01

Breast cancer local recurrence evolution and the effect of radio therapy on the breast cancer genome

Mårten Fernö, Lunds universitet
2017-02-16 – 2019-02-15

Breast cancer profiling of primary tumours based on cancer-associated long noncoding RNAs (lncRNAs) and splice variants

Johan Hartman, Karolinska Institutet
2017-09-07 – 2018-10-01

CYTOTOX-LANDSCAPE

Yenan Bryceson, Karolinska Institutet
2018-01-05 – 2019-02-01

Characterization of epigenomic programs underlying the development B cell leukemia and lymphoma.

Meena Kanduri, Göteborgs universitet
2017-11-29 – 2018-12-01

Clinical Genetics

Marie-Louise Bondeson, Uppsala universitet
2017-12-07 – 2019-01-01

Continuation of WGS of MEN1

Peter Stalberg, Uppsala universitet
2018-06-05 – 2019-01-01

EN KARTLÄGGNING AV DET EPIGENETISKA LANDSKAPET VID KMT2A-REARRANGERAD AKUT LYMFATISK LEUKEMI

Anna Andersson, Lunds universitet
2018-01-10 – 2019-02-01

Epigenetic gene regulation in acute myeloid leukemia

Sören Lehmann, Uppsala universitet
2017-11-27 – 2018-12-01

Epigenetic regulation of AML

Andreas Lennartsson, Karolinska Institutet
2017-12-08 – 2019-01-01

Familial cancer

Beatrice Melin, Umeå universitet
2017-12-12 – 2019-01-01

Familial coloncancer

Beatrice Melin, Umeå universitet
2017-12-12 – 2019-01-01

Gene fusions and mutations in head and neck tumors

Göran Stenman, Göteborgs universitet
2017-12-15 – 2019-01-01

Genetic analyses of malignant melanoma

Veronica Höiom, Karolinska Institutet
2018-01-18 – 2019-02-01

Genetic associations of serum lipidome in a prospective cohort

Celine Fernandez, Lunds universitet
2017-12-01 – 2018-06-01

Hyperinflammation-Seq

Yenan Bryceson, Karolinska Institutet
2018-01-04 – 2019-02-01

Intratumour diversity in paediatric cancer

David Gisselsson Nord, Lunds universitet
2018-01-10 – 2019-02-01

KaSP - WGS in Schizophrenia

Sophie Erhardt, Karolinska Institutet
2018-01-23 – 2018-08-01

Linked-read WGS in pediatric ALL

Jessica Nordlund, Uppsala universitet
2017-11-24 – 2018-12-01

LungCancerToxicity

Pelin Sahlén, Kungliga Tekniska högskolan
2018-02-16 – 2019-03-01

Lungcancer NGS

Johan Botling, Uppsala universitet
2017-12-11 – 2019-01-01

Metabolic effects of sleep loss in humans

Jonathan Cedernaes, Uppsala universitet
2018-01-05 – 2019-02-01

Molecular precision medicine in cancer

Mattias Rantalainen, Karolinska Institutet
2018-01-25 – 2019-08-01

Multiomics analysis of AML - #1

Linda Holmfeldt, Uppsala universitet
2018-01-23 – 2019-02-01

Multiomics analysis of AML - #2

Linda Holmfeldt, Uppsala universitet
2018-01-18 – 2019-02-01

Multiomics analysis of pediatric AML - #1

Linda Holmfeldt, Uppsala universitet
2018-02-16 – 2019-03-01

Multiomics analysis of pediatric AML - #2

Linda Holmfeldt, Uppsala universitet
2018-02-16 – 2019-03-01

Nation-wide collection and genomic analysis of childhood tumors

Monica Nistér, Karolinska Institutet
2017-05-08 – 2018-06-01

NeuroblastomaWGS

Tommy Martinsson, Göteborgs universitet
2017-12-07 – 2019-01-01

PCNSL RNAseqproject

Rose-Marie Amini, Uppsala universitet
2018-05-08 – 2019-06-01

Pan cancer analysis with focus on adrenal tumors

Joakim Crona, Uppsala universitet
2018-02-28 – 2019-03-01

RNA-Seq and DNA methylation in paediatric ALL

Jessica Nordlund, Uppsala universitet
2017-12-12 – 2019-01-01

RNAseq and DNAseq analysis on breast cancer patients

Kamila Czene, Karolinska Institutet
2017-05-12 – 2018-06-01

STABILITY GWAS

Lars Wallentin, Uppsala universitet
2017-12-15 – 2019-01-01

Single Cell RNA Sequencing for Endometrium Characterisation

Nageswara Rao Boggavarapu, Karolinska Institutet
2018-02-22 – 2019-03-01

Single cell sequencing study of breast cancer heterogeneity

Nancy Yu, Karolinska Institutet
2017-12-01 – 2018-12-01

Single-cell genomics in acute lymphoblastic leukemia

Vasilios Zachariadis, Karolinska Institutet
2018-05-22 – 2019-06-01

Swedegene - Angioedema

Mia Wadelius, Uppsala universitet
2018-02-16 – 2019-03-01

Swedegene-WGS

Mia Wadelius, Uppsala universitet
2018-04-01 – 2019-04-01

TRIBAL - A Translational approach to Identify Biomarkers for Asthma and Lung function impairment

Erik Melén, Karolinska Institutet
2018-01-05 – 2019-02-01

The Role of Rare and Low-Frequency Genetic Variation in Vitamin D Status

Karl Michaëlsson, Uppsala universitet
2018-06-05 – 2019-07-01

The molecular landscape of NSCLC

Patrick Micke, Uppsala universitet
2018-01-18 – 2019-02-01

Unbiased detection of microbial sequence in cerebrospinal fluid

Ka-Wei Tang, Göteborgs universitet
2018-03-16 – 2019-04-01

WGS of SI-NETs

Peter Stalberg, Uppsala universitet
2018-04-27 – 2018-12-01

Whole genome sequencing of Addison patients

Daniel Eriksson, Karolinska Institutet
2018-02-22 – 2019-03-01

lymphoma3

Gustav Arvidsson, Karolinska Institutet
2018-02-16 – 2019-03-01

sens2017_FHTG_exome

Hong Jiao, Karolinska Institutet
2017-11-16 – 2018-12-01

the role of CTCF binding in acute myeloid leukemia

Sören Lehmann, Uppsala universitet
2018-02-16 – 2018-09-01

Health Sciences (11)

Ageing with elegans

Alicja Wolk, Karolinska Institutet
2018-04-25 – 2019-05-01

GC-MS metabolomics of cardiovascular and metabolic traits

Tove Fall, Uppsala universitet
2018-02-16 – 2018-09-01

Genetics of cardiometabolic phenotypes

Lars Lind, Uppsala universitet
2017-12-06 – 2019-01-01

Impact of life-style on type 2 diabetes risk: unraveling mechanisms through multi-omics approaches

Karl Michaëlsson, Uppsala universitet
2018-05-23 – 2019-06-01

Metabolomics to reveal the impact of diet, lifestyle and persistent organic pollutants on type 2 diabetes

Lin Shi, Chalmers tekniska högskola
2018-02-16 – 2019-03-01

Molecular epidemiologic studies of aging and age-related diseases

Sara Hägg, Karolinska Institutet
2017-11-14 – 2018-08-01

PIVUS – fractures and body composition

Karl Michaëlsson, Uppsala universitet
2018-05-23 – 2019-06-01

Proteomics, metabolomics, genomics, lifestyle and disease – Epihealth and SMCC

Karl Michaëlsson, Uppsala universitet
2018-05-17 – 2019-06-01

SIMPLER

Karl Michaëlsson, Uppsala universitet
2018-02-16 – 2019-03-01

Uppsala Family Study

Liisa Byberg, Uppsala universitet
2018-05-23 – 2019-06-01

Vasaloppet fracture study

Karl Michaëlsson, Uppsala universitet
2018-04-25 – 2019-05-01

Medical Biotechnology (8)

A multi -omics system biology approach to identify disease control mechanisms i n HIV-1

Ujjwal Neogi, Karolinska Institutet
2017-12-07 – 2019-01-01

GWAS of juvenile arthritis using the JABBA cohort - part II

Helena Erlandsson Harris, Karolinska Institutet
2018-01-25 – 2018-08-01

Imiomics, metabolomics, proteomics, and genomics of Type-2-Diabetes Mellitus development and regression

Jan Komorowski, Uppsala universitet
2017-12-17 – 2019-01-01

Periodontitis

Tülay Yucel-Lindberg, Karolinska Institutet
2017-11-22 – 2018-12-01

Pharmacoepigenetics

Isabel Barragan, Karolinska Institutet
2018-02-27 – 2019-08-01

Somatic mutations in aging progenitor cells

Maria Eriksson, Karolinska Institutet
2017-11-14 – 2018-12-01

WGS of trio families in ID patients

Ann-Charlotte Thuresson, Uppsala universitet
2017-12-11 – 2019-01-01

b2015379 Spatial transcriptomics of rheumatoid arthritis

Patrik Ståhl, Kungliga Tekniska högskolan
2018-02-16 – 2019-03-01

Other Medical and Health Sciences (1)

The role of modifiable and non-modifiable risk factors in aging-associated diseases

Susanna Larsson, Karolinska Institutet
2018-05-22 – 2019-06-01

History and Archaeology (1)

Historic Swedish genomes

Anders Götherström, Stockholms universitet
2018-01-01 – 2019-01-01

Other (1)

Note: projects using the deprecated six-digit classification codes may end up under this heading.

UPPMAX test project

Peter Ankerstål, Uppsala universitet
2016-06-25 – 2018-10-01